PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014430-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 77aa    MW: 8721.67 Da    PI: 5.6595
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014430-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08750344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT    +++ +a +++ ++   +W+ +a+++  g+++++++ ++
  PSME_00014430-RA  7 SWTSKQNKQFERALALYDKDtpdRWHNVASMVD-GKSPEEVRKHY 50
                      6********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.657358IPR017884SANT domain
SMARTSM007176.1E-7456IPR001005SANT/Myb domain
PfamPF002491.1E-6750IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5758IPR009057Homeodomain-like
CDDcd001673.37E-7754No hitNo description
SuperFamilySSF466896.73E-13761IPR009057Homeodomain-like
PfamPF014663.3E-53457IPR016072SKP1 component, dimerisation
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MAGQLASWTS KQNKQFERAL ALYDKDTPDR WHNVASMVDG KSPEEVRKHY EILLEDFNCI  60
EAGQVPYPNY KSSGSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-33376679RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1134984e-73BT113498.1 Picea glauca clone GQ03411_B22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092800.12e-34PREDICTED: transcription factor RADIALIS-like
SwissprotQ58FS31e-33RAD_ANTMA; Transcription factor RADIALIS
TrEMBLD5ADC13e-35D5ADC1_PICSI; Putative uncharacterized protein
STRINGPOPTR_0004s16270.12e-32(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-32RAD-like 1